研究成果

清水班

Akram, I., Rohr, L., Shimizu, K. K., Shimizu-Inatsugi, R., & Sato, Y.: Spatial heterogeneity of disease infection attributable to neighbor genotypic identity in barley cultivars.
In Silico Plants. (2025).
https://doi.org/10.1093/insilicoplants/diaf023
Fukushima, K., Hayashi, M., & Watanabe, M.: The regulation of vacuole morphology in stigma papilla cells is involved in water transfer to pollen in Arabidopsis thaliana.
Plant Reproduction, 38(2). (2025).
https://doi.org/10.1007/s00497-025-00525-1
Halstead-Nussloch, G., Okada, M., Haberer, G., Lux, T., Islam, A. S. M. F., Hatakeyama, M., Briskine, R., White, B., Hall, A., Pozniak, C., Spannagl, M., Paape, T., & Shimizu, K. K.: Purifying selection on deleterious variants affected by the combination of subgenomes and gene expression in bread wheat.
Cell Reports, 45(2), 116785. (2026).
https://doi.org/10.1016/j.celrep.2025.116785
Jung, K., Akiyama, R., Nie, J., Nitta, M., Hamaya, N. B., Qureshi, N., Bhavani, S., Wicker, T., Keller, B., Kishii, M., Nasuda, S., & Shimizu, K. K.: Unveiling yellow rust resistance in the near-Himalayan region: insights from a nested association mapping study.
Theoretical and Applied Genetics, 138(7). (2025).
https://doi.org/10.1007/s00122-025-04886-z
Kudoh, H., Sakane, M., Marhold, K., Shimizu-Inatsugi, R., Shimizu, K. K., & Fukaki, H.: Cartwheel aerenchyma in Cardamine amara as a model of schizogenous tissue formation in plants.
iScience, 28(8). (2025).
https://doi.org/10.1016/j.isci.2025.113106
Sun, J., Sese, J., & Shimizu, K. K.: A likelihood ratio test for detecting shifts in homeolog expression ratios in allopolyploids.
New Phytologist, 249(1), 603-617. (2026).
https://doi.org/10.1111/nph.70648
: White, B., Lux, T., Rusholme-Pilcher, R., Juhász, A., Kaithakottil, G., Duncan, S., Simmonds, J., Rees, H., Wright, J., Colmer, J., Ward, S., Joynson, R., Coombes, B., Irish, N., Henderson, S., Barker, T., Chapman, H., Catchpole, L., Gharbi, K., ... Hall, A
De novo annotation reveals transcriptomic complexity across the hexaploid wheat pan-genome.
Nature Communications , 16(1). (2025).
https://doi.org/10.1038/s41467-025-64046-1
Deng, W., Takada, Y., Nanasato, Y., Kishida, K., Stari, L., Ohtsubo, Y., Tabei, Y., Watanabe, M., & Nagata, Y.: Transgenic Arabidopsis thaliana plants expressing bacterial γ-hexachlorocyclohexane dehydrochlorinase LinA.
BMC Biotechnology, 24(1), 42. (2024).
https://doi.org/10.1186/s12896-024-00867-0
Edger, P. P., Soltis, D. E., Yoshioka, S., Vallejo‐Marin, M., Shimizu‐Inatsugi, R., Shimizu, K. K.,: Salmon, A., Hiscock, S., Ainouche, M., & Soltis, P. S. Natural neopolyploids: a stimulus for novel research.
New Phytologist, 246(1), 78-93. (2025).
https://doi.org/10.1111/nph.20437
Nomura, Y., Okada, M., Tameshige, T., Takenaka, S., Shimizu, K. K., Nasuda, S., & Nagano, A. J.: Subgenome-informed statistical modeling of transcriptomes in 25 common wheat accessions reveals cis - and trans -regulation architectures.
Plant And Cell Physiology. (2025).
https://doi.org/10.1093/pcp/pcaf011
Moeko Okada, Kentaro K. Shimizu: Wheat: Recent Advances in Genomics to Explore the History of Domestication and Polyploidization
Phylogeographic History of Plants and Animals Coexisting with Humans in Asia.,155-180. (2024).
https://doi.org/10.1007/978-981-97-6887-5
Sato, Y., Shimizu-Inatsugi, R., Takeda, K., Schmid, B., Nagano, A. J., & Shimizu, K. K.: Reducing herbivory in mixed planting by genomic prediction of neighbor effects in the field.
Nature Communications, 15(1), 8467. (2024).
https://doi.org/10.1038/s41467-024-52374-7
Sun, J., & Matsushita, Y.: Predicting symptom severity in PSTVd ‐infected tomato plants using the PSTVd genome sequence.
Molecular Plant Pathology, 25(7). (2024).
https://doi.org/10.1111/mpp.13469
Watanabe, M., Yamagishi, H., Takagi, H., Endo, R., Kondo, T., & Koizuka, N.: Advances and perspectives of genetics and breeding in Brassicaceae crops.
Breeding Research, 26(1), 26.W05. (2024).
https://doi.org/10.1270/jsbbr.26.W05
林真妃, & 渡辺正夫: アブラナ科植物の受粉反応における雌しべプロトンポンプの役割の解明
アグリバイオ (Vol. 8, pp. 70-73). (2024).